Software

pyFLANK, a Graph Neural Network Based Null Distribution Inference Model for FST Outlier Detection

Type: Publication

Themes: Conversion, Feedstock Production

Keywords: AI/ML, Genetics, Genomics, Software

Comparing Four Heat-inducible Promoters in Stably Transformed Sugarcane Regarding Spatial and Temporal Control of Transgene Expression Reveals Candidates to Drive Stem-preferred Transgene Expression

Type: Dataset

Themes: Feedstock Production

Keywords: RNA Sequencing, Software, Sugarcane

Discovery, Characterization, and Application of Chromosomal Integration Sites for Stable Heterologous Gene Expression in Rhodotorula toruloides

Type: Dataset

Themes: Conversion

Keywords: Metabolic Engineering, Software, Transcriptomics

Design of Diverse, Functional Mitochondrial Targeting Sequences Across Eukaryotic Organisms Using Variational Autoencoder

Type: Dataset

Themes: Conversion, Feedstock Production

Keywords: AI/ML, Metabolic Engineering, Modeling, Software

Simulation Results for “Integration of Plant and Microbial Oil Processing at Oilcane Biorefineries for More Sustainable Biofuel Production” Publication

Type: Dataset

Themes: Conversion, Sustainability

Keywords: Life Cycle Assessment, Modeling, Software, Technoeconomic Analysis

CRISPR-COPIES: New Tool Accelerates and Optimizes Genome Editing

Type: News

Themes: Conversion

Keywords: Genome Engineering, News, Software

The Stem Cell-Type Transcriptome of Bioenergy Sorghum Reveals the Spatial Regulation of Secondary Cell Wall Networks

Type: Dataset

Themes: Feedstock Production

Keywords: Software, Transcriptomics

CRISPR-COPIES: An In silico Platform for Discovery of Neutral Integration Sites for CRISPR/Cas-facilitated Gene Integration

Type: Dataset

Themes: Conversion

Keywords: Software

Carbon Mitigation Payments Can Reduce the Riskiness of Bioenergy Crop Production

Type: Dataset

Themes: Sustainability

Keywords: Economics, Modeling, Software

Assessing the Efficiency Implications of Renewable Fuel Policy Design in the United States

Type: Dataset

Themes: Sustainability

Keywords: Economics, Modeling, Software

PlasmidMaker

Type: Dataset

Themes: Conversion

Keywords: Genome Engineering, Software

FUN-BioCROP: Fixation and Uptake of Nitrogen-Bioenergy Carbon, Rhizosphere, Organisms, and Protection

Type: Dataset

Themes: Sustainability

Keywords: Modeling, Software

CROPSR: An Automated Platform for Complex Genome-Wide CRISPR gRNA Design and Validation

Type: Dataset

Themes: Feedstock Production

Keywords: Genomics, Software

NetID

Type: Dataset

Themes: Conversion

Keywords: Metabolomics, Software

ECNet: Evolutionary Context-Integrated Neural Network

Type: Dataset

Themes: Conversion

Keywords: Software