CABBI Colloquia

Once a month, CABBI is organizing a colloquium for all of its researchers. At every colloquium, one grad student, postdoc, or PI will give a 20-minute presentation on his or her CABBI research. The presenter finishes the presentation with discussion questions to the audience in order to identify new integration opportunities within a theme, across CABBI themes, and/or with other U.S. Department of Energy Bioenergy Research Centers (BRCs). Each colloquium will finish with a networking event, including refreshments.

In the audience are CABBI researchers from all three themes. Scientists from the partner institutions are encouraged to attend and/or present through Zoom. The presenters will rotate among the themes and partner institutions.

Hoang Dinh

Conversion Theme

Chemical Engineering Ph.D. Candidate (Advisor Costas Maranas), Penn State University

Title of talk: “Accelerating Non-Model Yeast Engineering with Metabolic Models”
Date: Sept. 13, 2021

Kate Glanville

Sustainability Theme

Postdoc (Advisor Adina Howe), Iowa State University

Title of talk: “Consequences of Fertilization and Cropping System on Soil Priming and Nitrifiers”
Date: Aug. 16, 2021

Xueyi Xue

Feedstock Production Theme

Postdoc (Advisor Liqing Chen), University of Illinois Urbana-Champaign

Title of talk: “Optimize Sugar Partitioning to Enhance Sugar-Rich Traits in Stem and Delay Senescence by Altering the Source-Sink Relationship in Sorghum”
Date: July 19, 2021

Bruce Dien

Conversion Theme

Co-PI, USDA Agricultural Research Service, Peoria, Ill.

Title of talk: “Bioenergy 101: ‘Introduction to Bioprocessing of Lignocellulosic Feedstocks’ ”

and

Karolina Michalska and Darren Sherrell

Argonne National Laboratory (ANL)

Title of talk: “Opportunities for Biological and Environmental Research at Advanced Photon Source”
Date: May 3, 2021

Bijay Sharma

Sustainability Theme

Postdoc (Advisor Madhu Khanna), University of Illinois Urbana-Campaign

Title of talk: “Responsiveness of Miscanthus and Switchgrass Yields to Stand Age and Nitrogen Fertilization:
A Meta-Regression Analysis”

and

Mary Lipton and Scott Lea

Environmental Molecular Sciences Laboratory (EMSL)

Title of talk: “Collaborating on Bioenergy Research with the Environmental Molecular Sciences Laboratory”
Date: April 5, 2021

Yingqi Cai

Feedstock Production Theme

Postdoc (Advisor John Shanklin), Brookhaven National Laboratory

Title of talk: “Optimizing Plant Growth and Storage Lipid Accumulation in Vegetative Tissues”
Date: March 8, 2021

Zia Fatma

Conversion Theme

Postdoc (Advisor Huimin Zhao), University of Illinois Urbana-Champaign

Title of talk: “Building a Comprehensive Set of Genetic Toolkit for Metabolic Engineering of Issatchenkia orientalis
Date: Feb. 15, 2021
COLLOQUIA FROM 2020

Kelsie Ferin

Sustainability Theme

Ph.D. Candidate (Advisor Andy VanLoocke), Iowa State University

Title of talk: “Field-Scale Analysis of Land Use and Climate Change Effects on Water Quality in the Raccoon River Basin”
Date: Dec. 14, 2020

 

Sebastian Varela

Feedstock Production Theme

Postdoc (Advisor Andrew Leakey), University of Illinois Urbana-Champaign

Title of talk: “Understanding Growth Dynamics and Yield of Biomass Sorghum Using High-Resolution UAV Imagery Time Series”
Date: Nov. 16, 2020

 

Saurabh Sinha

Conversion Theme

Co-Investigator, University of Illinois Urbana-Champaign

Title of talk: “Bioenergy 101: Machine Learning”

&

Matthew Waugh

Conversion Theme

Postdoc (Advisor Yi Lu), University of Illinois Urbana-Champaign

Title of talk: “Novel Biocatalysts by Design: Designing Artificial Metalloenzymes for Selective Functionalization and Catalytic Upgrading of Unsaturated Fatty Acids”
Date: Oct. 12, 2020

 

Mark Burnham

Sustainability Theme

Postdoc (Advisors Wendy Yang and Evan DeLucia), University of Illinois Urbana-Champaign

Title of talk: “How Bioenergy Sorghum Influences Agroecosystem Nitrogen Cycling: Implications for Sustainability”
Date: Sept. 14, 2020

 

Ayman Eid

Feedstock Production Theme

Postdoc (Advisor Fredy Altpeter), University of Florida

Title of talk: “Towards Oilcane: Improving Genome Editing Tools for Precision Editing of Lipogenic and Agronomic Factors” 
Date: Aug. 17, 2020

 

Pan Yang

Sustainability Theme

Postdoc (Advisor Ximing Cai), University of Illinois Urbana-Champaign

Title of talk: “Simulation of Cellulosic Biofuel Expansion through an Agent-Based Model: Investigation of Multiple Policies”

Additional discussion: “CABBI’s Data and Software Knowledge Base and Data Management Updates” by CABBI Data Manager Leslie Stoecker, University of Illinois at Urbana-Champaign 

Date: June 1, 2020

 

Meera Gupta

Conversion Theme

Ph.D. Candidate (Advisor Martin Wühr), Princeton University

Title of talk: “Quantitative Mass Spectrometry for Comparative Analysis of Yeast Proteomes”
Date: May 4, 2020

 

Madara Hetti Arachchilage

Feedstock Production Theme

Postdoc (Advisor Amy Marshall-Colón), University of Illinois Urbana-Champaign

Title of talk: “Identification of Sorghum Stem-Preferred Genes and their Cis-Regulatory Elements through de-novo Promoter Analysis”
Date: April 6, 2020

 

Caitlin Moore

Sustainability Theme

Postdoc (Advisor Carl Bernacchi), University of Illinois Urbana-Champaign

Title of talk: “The CABBI Flux Tower Network“
Date: March 9, 2020

 

 

 

Qiang Yan

Conversion Theme

Postdoc (Advisor Brian Pfleger), University of Wisconsin at Madison

Title of talk: “Characterization of Key Enzymes for Oleochemical Synthesis“
Date: Jan. 27, 2020
COLLOQUIA FROM 2019

Leslie Stoecker

CABBI Research Data Coordinator

University of Illinois Urbana-Champaign

Title of talk: “CABBI Data Management: Tools, Procedures, and Guidance“
Date: Dec. 2, 2019

 

Hans Müller Paul

Feedstock Production Theme

Ph.D. Candidate (Advisor: Matthew Hudson), University of Illinois Urbana-Champaign

Title of talk: “CROPSR: An Automated Platform for Complex Genome-Wide CRISPR gRNA Design and Validation“
Date: Nov. 11, 2019

 

Stephan Lane

Conversion Theme

Biofoundry Manager, University of Illinois Urbana-Champaign

Title of talk: “Illinois Biological Foundry for Advanced Biomanufacturing (iBioFAB)“
Date: Oct. 7, 2019

 

Rui Shi

Sustainability Theme

Postdoc (Advisor Jeremy Guest), University of Illinois Urbana-Champaign

Title of talk: “Integrating Life Cycle Assessment and Process Design for Prioritization of Biofuels and Bioproducts Production“
Date: Sept. 9, 2019

 

Nicholas LaBonte

Feedstock Production Theme

Postdoc (Advisor Erik Sacks), University of Illinois Urbana-Champaign

Title of talk: “Genomics-Assisted Improvement of Miscanthus and Saccharum as Bioenergy Feedstocks“
Date: Aug. 5, 2019

 

Nurzhan Kuanyshev

Conversion Theme

Postdoc (Advisor Yong-Su Jin), University of Illinois Urbana-Champaign

Title of talk: “Discover Sugar Transporters Capable of Transporting Glucose and Xylose Simultaneously”
Date: July 8, 2019

 

Jeff Kent

Sustainability Theme

Postdoc (Advisor Tara Hudiburg), University of Idaho

Title of talk: “Modeling Energy Sorghum Emissions for the Rainfed United States”
Date: May 13, 2019

 

Sang Yeol Kim

Feedstock Production Theme

Research Scientist (Advisor Don Ort), University of Illinois Urbana-Champaign

Title of talk: “Posttranslational Modification of Rubisco activase to Govern Photosynthesis and Growth”
Date: April 1, 2019

 

Ming-Hsun Cheng

Conversion Theme

Postdoc (Advisor Vijay Singh), University of Illinois Urbana-Champaign

Title of talk: “Sugar Production from Bioenergy Sorghum by Pilot-Scale Continuous Hydrothermal Pretreatment”
Date: March 11, 2019
COLLOQUIA FROM 2018

Adam Von Haden

Sustainability Theme

Postdoc (Advisors Evan H. DeLucia and Wendy Yang), University of Illinois Urbana-Champaign

Title of talk: “Improving our Mechanistic Understanding of Plant and Soil Processes to Refine Predictions of Ecosystem Carbon Cycling in Biomass-Based Cropping Systems”
Date: Dec. 3, 2018

 

Shuai Li

Feedstock Production Theme

Postdoc (Advisor Lisa Ainsworth), University of Illinois Urbana-Champaign

Title of talk: “Testing Oxidative Stress Tolerance in C4 Bioenergy Crops”
Date: Nov. 12, 2018

 

Jing-Jing Liu

Conversion Theme

Postdoc (Advisor Christopher Rao), University of Illinois Urbana-Champaign

Title of talk:System Analysis of Lipomyces starkeyi Uncovered New Gene Targets for Metabolic Engineering
Date: Oct. 15, 2018

 

Chongya Jiang

Sustainability Theme

Postdoc (Advisor Kaiyu Guan), University of Illinois Urbana-Champaign

Title of talk: “Mapping marginal lands at field scale for the Midwestern United States”
Date: Sept.17, 2018

 

Hae Jin Kim

Feedstock Production Theme

Postdoc (Advisor Ed Cahoon), University of Nebraska at Lincoln

Title of talk: “Synthetic Design of Plant Oil Metabolism”
Date: Aug.13, 2018

 

 

Tong Si

Conversion Theme

Postdoc (Advisors Jonathan Sweedler, Huimin Zhao), University of Illinois Urbana-Champaign

Title of talk: “Automated Biomanufacturing of Microbial Libraries for Promoting Sustainability”
Date: June 4, 2018