Genetic Variation in Zea mays Influences Microbial Nitrification and Denitrification in Conventional Agroecosystems
Themes: Sustainability
Keywords: Genetics, Roots, Soil
Citation
Favela, A., Bohn, M.O., Kent, A. May 18, 2024. Data from: “Genetic Variation in Zea mays Influences Microbial Nitrification and Denitrification in Conventional Agroecosystems.” GitHub Repository.
Overview
Supplemental sequence processing and R statistical analysis for publication which compares the microbiome of 27 Zea cultivars: 12 Inbred maize genotypes, 9 hybrids, and 6 wild teosinte. The project contains amplicon data for various genes: 16S rRNA, ITS, bacterial amoA, Archeal amoA, nirS, nirK, and nosZ. In addition to functional potential assay data, and N2O flux.
Data
GitHub: Scripts (Shell, R, Perl)
NIH – NCBI BioProject: Rhizosphere microbiome from Maize cultivars
Download (22.7 KB) includes:
- Primers
- Genotype and classification summaries
- Bacterial, nirS, nosZ, Archael, nirK models