Data for Genetics of Flooding Tolerance in an F2 Miscanthus sacchariflorus ssp. lutarioriparius × M. sinensis Population

Themes: Feedstock Production

Keywords: Genetics, Miscanthus

Citation

Zerpa-Catanho, D., Xioa, L., LaBonte, N., Yoshinaga, Y., Blow, M., Barry, K., Kuang, X., Cebert, E., Mitros, T., Rokhsar, D., Swaminathan, K., Sacks, E. July 5, 2026. Data for: “Genetics of Flooding Tolerance in an F2 Miscanthus sacchariflorus ssp. lutarioriparius × M. sinensis Population.” University of Illinois Urbana-Champaign. DOI: 10.13012/B2IDB-4118043_V1.

Overview

Frequency distributions (histograms) for eight traits to study tolerance to partial submergence of actively growing plants (trait bins on x-axis, counts on y-axis) in an F2 Miscanthus sacchariflorus ssp. lutarioriparius × M. sinensis population (in yellow; n = 332), their F1 parents (n = 41), the original parents M. sacchariflorus ssp. lutarioriparius ‘PF30022’ and M. sinensis ‘PMS-014’, and the high-yielding control, M. ×giganteus (Mxg) 3x ‘1993–1780’, evaluated in tanks in a greenhouse.

This dataset contains all data and supplementary materials from “Genetics of flooding tolerance in an F2 Miscanthus sacchariflorus ssp. lutarioriparius × M. sinensis population“.

  1. The dataset S1 table contains the raw phenotypic data collected during the experiment.
  2. The dataset S2 table contains the LSmean values for the 24 traits studied.
  3. The dataset S3 table contains the TASSEL GBSv2 map, marker information, and genotype data used for mapping.
  4. The dataset S4 table contains information on candidate genes found in each of the QTL intervals.
  5. The dataset S5 table contains the GO annotations and KEGG enrichment analyses for those candidate genes.
  6. The dataset S6 table contains information on the sequences used to classify AP2 ERF transcription factors.
  7. The dataset S7 table contains information on AP2 ERF orthologs between Miscanthus and rice based on synteny.
  8. Supplementary file 1 contains the ANOVA results using the raw phenotypic data collected from protocol “A”.
  9. Supplementary file 2 contains the ANOVA results using the raw phenotypic data collected from protocol “B”.
  10. Supplementary file 3 contains notes on the comparison of SNP calling methods.
  11. Supplementary file 4 is a script for analyzing candidate genes found in QTL intervals.

Data

Illinois Data Bank: Phenotypic data, LSmean values, map/marker information/genotype data, candidate genes, ANOVA results, additional data and supplementary materials

NCBI: MxG LxMxiPilot Sequencing

NCBI: MxG Lutario x Msi F1 Lib2 Sequencing

NCBI: MxG Lutario x Msi F1 Lib3 Sequencing

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