CABBI Research Data: 102 Published Sets & Counting!

For questions, contact Data Manager Leslie Stoecker at lensor@illinois.edu.

Data Sets

DATA KEYWORDS

 

Divergent Evolution of Extreme Production
of Variant Plant Monounsaturated Fatty Acids

Theme: Feedstock Production

Genomics

BioEconomy Community Communication
Tool, an Agent-Based Model

Theme: Sustainability

Economics
Modeling

Photoinduced Chemomimetic Biocatalysis
for Enantioselective Intermolecular Radical
Conjugate Additions

Theme: Conversion

Catalysis

Optimizing Chemical-Free Pretreatment
for Maximizing Oil/Lipid Recovery from
Transgenic Bioenergy Crops and its Rapid
Analysis Using Time Domain-NMR

Theme: Conversion

Feedstock Bioprocessing

Near-Complete Genome Sequence of
Zygosaccharomyces rouxii NRRL Y-64007, a
Yeast Capable of Growing on Lignocellulosic
Hydrolysates

Theme: Conversion

Genomics

Long-Term Yields in Annual and Perennial
Bioenergy Crops in the Midwestern USA

Theme: Sustainability

Field Data

University of Illinois AmeriFlux Measurements

Theme: Sustainability

Field Data

Metabolic Engineering of Rhodotorula toruloides
IFO0880 Improves C16 and C18 Fatty Alcohol
Production from Synthetic Media

Theme: Conversion

Genome Engineering
Genomics

Sorghum bicolor Core Metabolism Model

Theme: Feedstock Production

Modeling

Testing Unified Theories for Ozone Response
in C4 Species

Themes: Feedstock Production, Sustainability

Field Data

PlasmidMaker

Theme: Conversion

Genome Engineering
Software

Data for Intra- and Inter-Annual Variability
of Nitrification in the Rhizosphere of Field-Grown
Bioenergy Sorghum

Theme: Sustainability

Field Data
Genomics

FUN-BioCROP: Fixation and Uptake
of Nitrogen-Bioenergy Carbon, Rhizosphere,
Organisms, and Protection

Theme: Sustainability

Modeling
Software

CROPSR: An Automated Platform for Complex
Genome-Wide CRISPR gRNA Design and Validation

Theme: Feedstock Production

Genomics
Software

Adoption of Perennial Energy Crops in the U.S. Midwest: Causal and Heterogeneous Determinants

Theme: Sustainability

Modeling

Metabolic Engineering of the Oleaginous
Yeast Yarrowia lipolytica PO1f for Production
of Erythritol from Glycerol

Theme: Conversion

Genome Engineering

MetaFunPrimer

Theme: Sustainability

Genomics

NetID

Theme: Conversion

Metabolomics
Software

Integrating Transcriptomic and Metabolomic
Analysis of the Oleaginous Yeast
Rhodosporidium toruloides IFO0880 During
Growth under Different Carbon Sources

Theme: Conversion

Metabolomics
Transcriptomics

ECNet: Evolutionary Context-Integrated Neural
Network

Theme: Conversion

Software

Maize and Sorghum Establishment and Yield
Following Pre-Emergence Waterlogging

Theme: Sustainability

Biomass Analytics
Field Data

Complete and Efficient Conversion of Plant Cell
Wall Hemicellulose into High-Value Bioproducts
by Engineered Yeast

Theme: Conversion

Genome Engineering

L-Malic Acid Production from Xylose by
Engineered Saccharomyces cerevisiae

Themes: Conversion, Feedstock Production

Genome Engineering

Hydrothermal Pretreatment for Valorization of
Genetically Engineered Bioenergy Crop for Lipid
and Cellulosic Sugar Recovery

Themes: Conversion, Feedstock Production

Feedstock Bioprocessing

Soil microbiome RNA of Miscanthus x giganteus
at LAMPS Study Site

Theme: Sustainability

Genomics

EnZymClass: Ensemble Method for Enzyme
Classification

Theme: Conversion

Proteomics
Software

Investigating the Role of Transcriptional
Regulator Ure2 on the Metabolism of
Saccharomyces cerevisiae: A Multi-Omics Approach

Theme: Conversion

Metabolomics
Transcriptomics

Conversion of High-Solids Hydrothermally
Pretreated Bioenergy Sorghum to Lipids
and Ethanol Using Yeast Cultures

Theme: Conversion

Feedstock Bioprocessing

Next-Generation Sequencing Data
from a CUT&RUN Study of R. toruloides IFO0880
Cse4 and Orc1 Binding Sites

Theme: Conversion

Genome Engineering
Genomics

Soil Net Nitrogen Mineralization and Leaching
under Miscanthus × giganteus and Zea mays

Theme: Sustainability

Biomass Analytics
Field Data

Response Surface Methodology Guided
Adsorption and Recovery of Free Fatty Acids
from Oil Using Resin

Theme: Conversion

Feedstock Bioprocessing

UAV-Based Multispectral Time-Series
Imagery of Biomass Sorghum — 2019

Theme: Feedstock Production

Biomass Analytics

C4 Dynamic Model and Gas Exchange Data

Theme: Feedstock Production

Modeling
Software

Renewable Linear Alpha-Olefins by Base-Catalyzed Dehydration of Biologically-Derived Fatty Alcohols

Themes: Conversion, Sustainability

Catalysis
Modeling

macroMS

Theme: Conversion

Mass Spectrometry
Software

Technical and Economic Feasibility of an Integrated
Ethanol and Anthocyanin Coproduction Process
Using Purple Corn Stover

Theme: Conversion

Economics
Feedstock Bioprocessing
Modeling

Genotype-Environment-Management
Interactions in Biomass Yield and
Feedstock Composition of Photoperiod-
Sensitive Energy Sorghum

Theme: Sustainability

Biomass Analytics
Field Data

Convolutional Neural Network-based
Sequence-to-Expression Prediction Tool
(CoNSEPT)

Theme: Conversion

Software

OWD.2 TAG Expression

Theme: Feedstock Production

Biomass Analytics

Photosynthetic Performance Measurements
in Biomass Sorghum Varietals in Central Illinois
During Four Growing Seasons

Theme: Feedstock Production

Field Data

Reactive Species and Reaction Pathways for the
Oxidative Cleavage of 4-Octene and Oleic Acid
with H2O2 over Tungsten Oxide Catalysts

Theme: Conversion

Catalysis

Multiallelic, Targeted Mutagenesis of
Magnesium Chelatase with CRISPR-Cas9
Provides a Rapidly Scorable Phenotype in
Highly Polyploid Sugarcane

Theme: Feedstock Production

Genome Engineering
Genomics

Simulated Land Allocation, Nitrogen Use,
and Nitrogen Loss in the Mississippi Atchafalaya
River Basin for Various RFS2 (Renewable Fuel
Standard) Policy Scenarios

Theme: Sustainability

Economics
Modeling
Software

Characterization of the Ghd8 Flowering
Time Gene in a Mini-Core Collection
of Miscanthus sinensis

Theme: Feedstock Production

Genomics

SLOPE Daily and 250 M Gross Primary
Productivity (GPP) for the CONUS, 2000-2019

Theme: Sustainability

Geospatial
Modeling

AgroIBIS VSF Farmed Pothole Ponding Model Runs

Theme: Sustainability

Biomass Analytics
Field Data
Modeling

Deconvolution Software to Quantify
TMTProC Data

Theme: Conversion

Proteomics
Software

Bioenergy Sorghum Maintains Photosynthetic
Capacity in Elevated Ozone Concentrations

Themes: Feedstock Production, Sustainability

Field Data

Managing Flowering Time in Miscanthus and
Sugarcane to Facilitate Intra- and Intergeneric
Crosses

Theme: Feedstock Production

Phenomics

Biogeochemical Fluxes for Three Bioenergy Crops

Theme: Sustainability

Field Data

BEPAM-E Model Code and CABBI Simulation
Results for ‘Repeal of the Clean Power Plan:
Social Cost and Distributional Implications’

Theme: Sustainability

Economics
Modeling
Software

Land Productivity and Land Availability for
Growing Bioenergy Crops in the Contiguous U.S.

Theme: Sustainability

Geospatial
Modeling

Miscanthus sinensis Genome

Theme: Feedstock Production

Genomics
RNA Sequencing
Transcriptomics

Enhanced 2′-Fucosyllactose Production by
Engineered Saccharomyces cerevisiae using
Xylose as a Co-Substrate

Theme: Conversion

Genome Engineering

BEPAM Model Code and CABBI Simulation Results
for ‘Assessing the Additional Carbon Savings
with Biofuel’

Theme: Sustainability

Economics
Modeling
Software

Biodiesel Production from Engineered
Sugarcane Lipids under Uncertain
Feedstock Compositions: Process Design
and Techno-Economic Analysis

Theme: Conversion

Economics
Feedstock Bioprocessing
Modeling

Unique Contributions of Chlorophyll and
Nitrogen to Predict Crop Photosynthetic Capacity
from Leaf Spectroscopy

Themes: Feedstock Production, Sustainability

Biomass Analytics
Modeling

BEPAM Model Code and CABBI Simulation Results
for ‘Assessing the Returns to Land and Greenhouse
Gas Savings from Producing Energy Crops on
Conservation Reserve Program Land’

Theme: Sustainability

Economics
Modeling
Software

Variability in Structural Carbohydrates,
Lipid Composition, and Cellulosic Sugar
Production from Industrial Hemp Varieties

Themes: Conversion, Feedstock Production

Biomass Analytics
Feedstock Bioprocessing

High Solids Loading Biorefinery for the Production
of Cellulosic Sugars from Bioenergy Sorghums

Theme: Conversion

Feedstock Bioprocessing

BEPAM Model Code and CABBI Simulation
Results for ‘The Economic and Environmental
Costs and Benefits of the Renewable Fuel Standard’

Theme: Sustainability

Economics
Modeling
Software

DayCent Data and Results for ‘Robust Paths
to Net Greenhouse Gas Mitigation and Negative
Emissions via Advanced Biofuels’

Theme: Feedstock Production

Modeling

High-Level β-Carotene Production from Xylose
by Engineered Saccharomyces cerevisiae without Overexpression of a Truncated HMG1 (tHMG1)

Theme: Conversion

Genome Engineering

Arabidopsis Plants Expressing Only the
Redox-Regulated Rca-α Isoform Have
Constrained Photosynthesis and Plant Growth

Theme: Feedstock Production

Biomass Analytics
Phenomics

Stereoconvergent Reduction of Activated
Alkenes by a Nicotinamide Free Synergistic
Photobiocatalytic System

Theme: Conversion

Catalysis

Metabolic Engineering of β-Oxidation to
Leverage Thioesterases for Production of
2-Heptanone, 2-Nonanone, and 2-Undecanone

Theme: Conversion

Metabolomics

Equivalent Soil Mass Calculation Software

Theme: Sustainability

Software

A Mass Spectrometry-Based High-Throughput Screening Method for Engineering Fatty Acid Synthases with Improved Production of Medium Chain Fatty Acids

Theme: Conversion

Lipidomics
Metabolomics

A Genetic Toolbox for Metabolic Engineering
of Issatchenkia orientalis

Theme: Conversion

Genome Engineering
Genomics
Transcriptomics

BioSTEAM and BioSTEAM-LCA

Themes: Conversion, Sustainability

Economics
Modeling
Software

Soil Bacterial Microbial Community Associated
with Miscanthus giganteus Sequencing Data

Theme: Sustainability

Genomics

Photoenzymatic Enantioselective Intermolecular
Radical Hydroalkylation: Experimental Crystal
Structure Determination

Theme: Conversion

Catalysis

Land Productivity and Land Availability
for Growing Bioenergy Crop in the
Contiguous U.S.

Theme: Sustainability

Economics
Modeling

Production of Galactitol from Galactose by
Oleaginous Yeast Rhodosporidium toruloides
IFO0880

Theme: Conversion

Genomics
Metabolomics

Reward-Based Participant Management
for Crowd-Sourcing Rainfall Monitoring:
An Agent-Based Model Simulation

Theme: Sustainability

Modeling
Software

Assessing Precipitation, Evapotranspiration,
and NDVI as Controls of U.S. Great Plains
Plant Production

Theme: Sustainability

Field Data
Modeling

PhenoCam Dataset v2.0 — Vegetation
Phenology from Digital Camera Imagery,
2000-2018

Theme: Sustainability

Field Data

PhenoCam Dataset v2.0 — Digital Camera
Imagery from the PhenoCam Network,
2000-2018

Theme: Sustainability

Field Data

Impact of Fractionation Process on the Technical
and Economic Viability of Corn Dry Grind Ethanol
Process

Theme: Conversion

Feedstock Bioprocessing
Modeling

Microbial Carbon Use Efficiency Predicted
from Genome-Scale Metabolic Models

Theme: Sustainability

Metabolomics
Modeling
Phylogenetic Relationship

Bayesian Confidence Intervals for Multiplexed
Proteomics Integrate Ion-Statistics with
Peptide Quantification Concordance

Theme: Conversion

Proteomics
Software

Development of a CRISPR/Cas9-Based Tool
for Gene Deletion in
 Issatchenkia orientalis

Theme: Conversion

Genome Engineering
Genomics
Transcriptomics

Sugar Production from Bioenergy Sorghum
by Using Pilot-Scale Continuous Hydrothermal
Pretreatment Combined with Disk Refining

Themes: Conversion, Sustainability

Genomics
Hydrolysate

Adopting Bioenergy Crops: Does Farmers’
Attitude toward Loss Matter?

Theme: Sustainability

Economics
Modeling
Software

Development of a CRISPR/Cas9 System
for High-Efficiency Multiplexed Gene Deletion
in Rhodosporidium toruloides

Theme: Conversion

Genome Engineering
Genomics
Transcriptomics

Excessive Rainfall Leads to Maize Yield
Loss of a Comparable Magnitude to
Extreme Drought in the United States

Theme: Sustainability

Economics
Field Data

Highly Efficient Single-Pot Scarless
Golden Gate Assembly

Theme: Conversion

Genome Engineering
Genomics

Generation of a Selectable Marker Free, Highly
Expressed Single Copy Locus as Landing Pad
for Transgene Stacking in Sugarcane

Theme: Feedstock Production

Biomass Analytics
Genomics

Miscanthus sinensis Multi-Location Trial:
Phenotypic Analysis, Genome-Wide
Association, and Genomic Prediction

Theme: Feedstock Production

Biomass Analytics
Genomics

Winter Hardiness of Miscanthus (III):
Genome‐Wide Association and Genomic
Prediction for Overwintering Ability in
Miscanthus sinensis

Theme: Feedstock Production

Biomass Analytics
Genomics

Proteotoxicity from Aberrant Ribosome
Biogenesis Compromises Cell Fitness

Theme: Conversion

Proteomics
RNA Sequencing

RefSoil Database

Theme: Sustainability

Genomics

Miscanthus x giganteus Yield in a REpeated
PLAnting Year (REPLAY) Experiment across
Three Sites in Iowa, USA

Theme: Sustainability

Biomass Analytics
Field Data

pH Selectively Regulates Citric Acid and
Lipid Production in Yarrowia lipolytica W29
During Nitrogen-Limited Growth on Glucose

Theme: Conversion

RNA Sequencing
Transcriptomics

Peak Annotation and Verification Engine
for Untargeted LC-MS Metabolomics

Theme: Conversion

Metabolomics
Software

Ethanol Production from Corn Fiber Separated
after Liquefaction in the Dry Grind Process

Theme: Conversion

Feedstock Bioprocessing

CropWatR

Theme: Sustainability

Economics
Modeling

A Designed Heme-[4Fe-4S] Metalloenzyme
Catalyzes Sulfite Reduction Like the Native
Enzyme

Theme: Conversion

Catalysis

Increasing Ethanol Yield through Fiber
Conversion in Corn Dry Grind Process

Theme: Conversion

Feedstock Bioprocessing

Rapid Screening of Lanthipeptide Analogs
via In-Colony Removal of Leader Peptides
in Escherichia coli

Theme: Conversion

Genome Engineering
Genomics

Cooperative Asymmetric Reactions Combining
Photocatalysis and Enzymatic Catalysis

Theme: Conversion

Catalysis