CABBI Research Data: 127 Published Sets & Counting!
For questions, contact Data Manager Leslie Stoecker at lensor@illinois.edu.
Data Sets
DATA KEYWORDS
Determining Spatially Varying Profit-Maximizing Management Practices for Miscanthus
and Switchgrass Production in the Rainfed
United States
Theme: Sustainability
Biomass Analytics
Field Data
Reshaping the 2-Pyrone Synthase Active Site
for Chemoselective Biosynthesis of Polyketides
Theme: Conversion
Metabolomics
Plant Litter Traits Control Microbial Decomposition
and Drive Soil Carbon Stabilization
Theme: Sustainability
Biomass Analytics
Field Data
The Effects of Sequential Hydrothermal-Mechanical Refining Pretreatment on Cellulose Structure
Changes and Sugar Recoveries
Theme: Conversion
Biomass Analytics
Economics
Hydrolysate
UAV Remote Sensing Imagery of Miscanthus
— 2020
Theme: Feedstock Production
Biomass Analytics
Remote Sensing
Agroecosystem Model Simulations Reveal
Spatial Variability in Relative Productivity
in Biomass Sorghum and Maize in Iowa, USA
Theme: Sustainability
Biomass Analytics
Field Data
Modeling
A Consolidated Bioprocess Design to Produce
Multiple High-Value Platform Chemicals
from Lignocellulosic Biomass and Its
Technoeconomic Feasibility
Theme: Conversion
Economics
Assessing the Efficiency Implications
of Renewable Fuel Policy Design
in the United States
Theme: Sustainability
Economics
Modeling
Software
The Leaf Economics Spectrum of Triploid
and Tetraploid C4 Grass Miscanthus x giganteus
Theme: Feedstock Production
Biomass Analytics
Field Data
Increased Bundle Sheath Leakiness of CO2
During Photosynthetic Induction Shows
a Lack of Coordination between the C4
and C3 Cycles
Themes: Feedstock Production, Sustainability
Field Data
Modeling
Assessing Marginal Land Availability Based
on Land Use Change Information in the
Contiguous United States
Theme: Sustainability
Geospatial
Modeling
Rewiring Yeast Metabolism for Producing
2,3-Butanediol and Two Downstream
Applications: Techno-Economic Analysis and
Life Cycle Assessment of Methyl Ethyl Ketone
(MEK) and Agricultural Biostimulant Production
Themes: Conversion, Sustainability
Economics
Metabolomics
Glucose Feeds the Tricarboxylic Acid Cycle
via Excreted Ethanol in Fermenting Yeast
Theme: Conversion
Metabolomics
Valorization of Miscanthus x giganteus
for Sustainable Recovery of Anthocyanins
and Enhanced Production of Sugars
Theme: Conversion
Biomass Analytics
Hydrolysate
Solvent-Free Enzymatic Esterification of Free
Fatty Acids with Glycerol for Biodiesel
Application: Optimized Using the Taguchi
Experimental Method
Theme: Conversion
Lipidomics
System Analysis of Lipomyces starkeyi During
Growth on Various Plant‑Based Sugars
Theme: Conversion
Metabolomics
Transcriptomics
Divergent Evolution of Extreme Production
of Variant Plant Monounsaturated Fatty Acids
Theme: Feedstock Production
Genomics
Purple Acid Phosphatase2 Stimulates a Futile
Cycle of Lipid Synthesis and Degradation, and
Mitigates the Negative Growth Effects of
Triacylglycerol Accumulation in Vegetative Tissues
Theme: Feedstock Production
Biomass Analytics
Lipidomics
BioEconomy Community Communication
Tool, an Agent-Based Model
Theme: Sustainability
Economics
Modeling
Attributing Differences of Solar-Induced
Chlorophyll Fluorescence (SIF)-Gross Primary
Production (GPP) Relationships between Two
C4 Crops: Corn and Miscanthus
Themes: Feedstock Production, Sustainability
Field Data
Catalyst and Reactor Design Considerations
for Selective Production of Acids by Oxidative
Cleavage of Alkenes with H2O2
Theme: Conversion
Catalysis
Photoinduced Chemomimetic Biocatalysis
for Enantioselective Intermolecular Radical
Conjugate Additions
Theme: Conversion
Catalysis
Optimizing Chemical-Free Pretreatment
for Maximizing Oil/Lipid Recovery from
Transgenic Bioenergy Crops and its Rapid
Analysis Using Time Domain-NMR
Theme: Conversion
Feedstock Bioprocessing
Near-Complete Genome Sequence of
Zygosaccharomyces rouxii NRRL Y-64007, a
Yeast Capable of Growing on Lignocellulosic
Hydrolysates
Theme: Conversion
Genomics
Coprocessing Corn Germ Meal for Oil Recovery
and Ethanol Production: A Process Model
for Lipid-Producing Energy Crops
Theme: Conversion
Hydrolysate
Lipidomics
Aerial Imagery Can Detect Nitrogen Fertilizer
Effects on Biomass and Stand Health
of Miscanthus × giganteus
Theme: Feedstock Production
Biomass Analytics
Field Data
Photosynthesis in Aging Perennial
and Leaf Nitrogen
Theme: Sustainability
Biomass Analytics
Field Data
Long-Term Yields in Annual and Perennial
Bioenergy Crops in the Midwestern USA
Theme: Sustainability
Field Data
University of Illinois AmeriFlux Measurements
Theme: Sustainability
Field Data
Metabolic Engineering Strategies to Produce
Medium-Chain Oleochemicals via Acyl-ACP:CoA
Transacylase Activity
Theme: Conversion
Genome Engineering
Genomics
Metabolic Engineering of Rhodotorula toruloides
IFO0880 Improves C16 and C18 Fatty Alcohol
Production from Synthetic Media
Theme: Conversion
Genome Engineering
Genomics
Sorghum bicolor Core Metabolism Model
Theme: Feedstock Production
Modeling
Data for Responsiveness of Miscanthus and
Switchgrass Yields to Stand Age and Nitrogen
Fertilization: A Meta-Regression Analysis
Theme: Sustainability
Field Data
Modeling
Testing Unified Theories for Ozone Response
in C4 Species
Themes: Feedstock Production, Sustainability
Field Data
PlasmidMaker
Theme: Conversion
Genome Engineering
Software
Data for Intra- and Inter-Annual Variability
of Nitrification in the Rhizosphere of Field-Grown
Bioenergy Sorghum
Theme: Sustainability
Field Data
Genomics
FUN-BioCROP: Fixation and Uptake
of Nitrogen-Bioenergy Carbon, Rhizosphere,
Organisms, and Protection
Theme: Sustainability
Modeling
Software
CROPSR: An Automated Platform for Complex
Genome-Wide CRISPR gRNA Design and Validation
Theme: Feedstock Production
Genomics
Software
Adoption of Perennial Energy Crops in the U.S. Midwest: Causal and Heterogeneous Determinants
Theme: Sustainability
Modeling
Genome-Wide Transcriptional Regulation
in Saccharomyces cerevisiae in Response
to Carbon Dioxide
Theme: Conversion
Genome Engineering
Metabolic Engineering of the Oleaginous
Yeast Yarrowia lipolytica PO1f for Production
of Erythritol from Glycerol
Theme: Conversion
Genome Engineering
MetaFunPrimer
Theme: Sustainability
Genomics
NetID
Theme: Conversion
Metabolomics
Software
Integrating Transcriptomic and Metabolomic
Analysis of the Oleaginous Yeast
Rhodosporidium toruloides IFO0880 During
Growth under Different Carbon Sources
Theme: Conversion
Metabolomics
Transcriptomics
ECNet: Evolutionary Context-Integrated Neural
Network
Theme: Conversion
Software
Maize and Sorghum Establishment and Yield
Following Pre-Emergence Waterlogging
Theme: Sustainability
Biomass Analytics
Field Data
Complete and Efficient Conversion of Plant Cell
Wall Hemicellulose into High-Value Bioproducts
by Engineered Yeast
Theme: Conversion
Genome Engineering
L-Malic Acid Production from Xylose by
Engineered Saccharomyces cerevisiae
Themes: Conversion, Feedstock Production
Genome Engineering
Hydrothermal Pretreatment for Valorization of
Genetically Engineered Bioenergy Crop for Lipid
and Cellulosic Sugar Recovery
Themes: Conversion, Feedstock Production
Feedstock Bioprocessing
Soil microbiome RNA of Miscanthus x giganteus
at LAMPS Study Site
Theme: Sustainability
Genomics
EnZymClass: Ensemble Method for Enzyme
Classification
Theme: Conversion
Proteomics
Software
Investigating the Role of Transcriptional
Regulator Ure2 on the Metabolism of
Saccharomyces cerevisiae: A Multi-Omics Approach
Theme: Conversion
Metabolomics
Transcriptomics
Conversion of High-Solids Hydrothermally
Pretreated Bioenergy Sorghum to Lipids
and Ethanol Using Yeast Cultures
Theme: Conversion
Feedstock Bioprocessing
Next-Generation Sequencing Data
from a CUT&RUN Study of R. toruloides IFO0880
Cse4 and Orc1 Binding Sites
Theme: Conversion
Genome Engineering
Genomics
Soil Net Nitrogen Mineralization and Leaching
under Miscanthus × giganteus and Zea mays
Theme: Sustainability
Biomass Analytics
Field Data
Response Surface Methodology Guided
Adsorption and Recovery of Free Fatty Acids
from Oil Using Resin
Theme: Conversion
Feedstock Bioprocessing
UAV-Based Multispectral Time-Series
Imagery of Biomass Sorghum — 2019
Theme: Feedstock Production
Biomass Analytics
C4 Dynamic Model and Gas Exchange Data
Theme: Feedstock Production
Modeling
Software
Renewable Linear Alpha-Olefins by Base-Catalyzed Dehydration of Biologically-Derived Fatty Alcohols
Themes: Conversion, Sustainability
Catalysis
Modeling
macroMS
Theme: Conversion
Mass Spectrometry
Software
Technical and Economic Feasibility of an Integrated
Ethanol and Anthocyanin Coproduction Process
Using Purple Corn Stover
Theme: Conversion
Economics
Feedstock Bioprocessing
Modeling
Genotype-Environment-Management
Interactions in Biomass Yield and
Feedstock Composition of Photoperiod-
Sensitive Energy Sorghum
Theme: Sustainability
Biomass Analytics
Field Data
Convolutional Neural Network-based
Sequence-to-Expression Prediction Tool
(CoNSEPT)
Theme: Conversion
Software
OWD.2 TAG Expression
Theme: Feedstock Production
Biomass Analytics
Photosynthetic Performance Measurements
in Biomass Sorghum Varietals in Central Illinois
During Four Growing Seasons
Theme: Feedstock Production
Field Data
Reactive Species and Reaction Pathways for the
Oxidative Cleavage of 4-Octene and Oleic Acid
with H2O2 over Tungsten Oxide Catalysts
Theme: Conversion
Catalysis
Multiallelic, Targeted Mutagenesis of
Magnesium Chelatase with CRISPR-Cas9
Provides a Rapidly Scorable Phenotype in
Highly Polyploid Sugarcane
Theme: Feedstock Production
Genome Engineering
Genomics
Simulated Land Allocation, Nitrogen Use,
and Nitrogen Loss in the Mississippi Atchafalaya
River Basin for Various RFS2 (Renewable Fuel
Standard) Policy Scenarios
Theme: Sustainability
Economics
Modeling
Software
Characterization of the Ghd8 Flowering
Time Gene in a Mini-Core Collection
of Miscanthus sinensis
Theme: Feedstock Production
Genomics
SLOPE Daily and 250 M Gross Primary
Productivity (GPP) for the CONUS, 2000-2019
Theme: Sustainability
Geospatial
Modeling
AgroIBIS VSF Farmed Pothole Ponding Model Runs
Theme: Sustainability
Biomass Analytics
Field Data
Modeling
Deconvolution Software to Quantify
TMTProC Data
Theme: Conversion
Proteomics
Software
Bioenergy Sorghum Maintains Photosynthetic
Capacity in Elevated Ozone Concentrations
Themes: Feedstock Production, Sustainability
Field Data
Managing Flowering Time in Miscanthus and
Sugarcane to Facilitate Intra- and Intergeneric
Crosses
Theme: Feedstock Production
Phenomics
Biogeochemical Fluxes for Three Bioenergy Crops
Theme: Sustainability
Field Data
BEPAM-E Model Code and CABBI Simulation
Results for ‘Repeal of the Clean Power Plan:
Social Cost and Distributional Implications’
Theme: Sustainability
Economics
Modeling
Software
Land Productivity and Land Availability for
Growing Bioenergy Crops in the Contiguous U.S.
Theme: Sustainability
Geospatial
Modeling
Miscanthus sinensis Genome
Theme: Feedstock Production
Genomics
RNA Sequencing
Transcriptomics
Enhanced 2′-Fucosyllactose Production by
Engineered Saccharomyces cerevisiae using
Xylose as a Co-Substrate
Theme: Conversion
Genome Engineering
BEPAM Model Code and CABBI Simulation Results
for ‘Assessing the Additional Carbon Savings
with Biofuel’
Theme: Sustainability
Economics
Modeling
Software
Biodiesel Production from Engineered
Sugarcane Lipids under Uncertain
Feedstock Compositions: Process Design
and Techno-Economic Analysis
Theme: Conversion
Economics
Feedstock Bioprocessing
Modeling
Unique Contributions of Chlorophyll and
Nitrogen to Predict Crop Photosynthetic Capacity
from Leaf Spectroscopy
Themes: Feedstock Production, Sustainability
Biomass Analytics
Modeling
BEPAM Model Code and CABBI Simulation Results
for ‘Assessing the Returns to Land and Greenhouse
Gas Savings from Producing Energy Crops on
Conservation Reserve Program Land’
Theme: Sustainability
Economics
Modeling
Software
Variability in Structural Carbohydrates,
Lipid Composition, and Cellulosic Sugar
Production from Industrial Hemp Varieties
Themes: Conversion, Feedstock Production
Biomass Analytics
Feedstock Bioprocessing
High Solids Loading Biorefinery for the Production
of Cellulosic Sugars from Bioenergy Sorghums
Theme: Conversion
Feedstock Bioprocessing
BEPAM Model Code and CABBI Simulation
Results for ‘The Economic and Environmental
Costs and Benefits of the Renewable Fuel Standard’
Theme: Sustainability
Economics
Modeling
Software
DayCent Data and Results for ‘Robust Paths
to Net Greenhouse Gas Mitigation and Negative
Emissions via Advanced Biofuels’
Theme: Feedstock Production
Modeling
High-Level β-Carotene Production from Xylose
by Engineered Saccharomyces cerevisiae without Overexpression of a Truncated HMG1 (tHMG1)
Theme: Conversion
Genome Engineering
Arabidopsis Plants Expressing Only the
Redox-Regulated Rca-α Isoform Have
Constrained Photosynthesis and Plant Growth
Theme: Feedstock Production
Biomass Analytics
Phenomics
Stereoconvergent Reduction of Activated
Alkenes by a Nicotinamide Free Synergistic
Photobiocatalytic System
Theme: Conversion
Catalysis
Metabolic Engineering of β-Oxidation to
Leverage Thioesterases for Production of
2-Heptanone, 2-Nonanone, and 2-Undecanone
Theme: Conversion
Metabolomics
Equivalent Soil Mass Calculation Software
Theme: Sustainability
Software
A Mass Spectrometry-Based High-Throughput Screening Method for Engineering Fatty Acid Synthases with Improved Production of Medium Chain Fatty Acids
Theme: Conversion
Lipidomics
Metabolomics
A Genetic Toolbox for Metabolic Engineering
of Issatchenkia orientalis
Theme: Conversion
Genome Engineering
Genomics
Transcriptomics
BioSTEAM and BioSTEAM-LCA
Themes: Conversion, Sustainability
Economics
Modeling
Software
Soil Bacterial Microbial Community Associated
with Miscanthus giganteus Sequencing Data
Theme: Sustainability
Genomics
Photoenzymatic Enantioselective Intermolecular
Radical Hydroalkylation: Experimental Crystal
Structure Determination
Theme: Conversion
Catalysis
Land Productivity and Land Availability
for Growing Bioenergy Crop in the
Contiguous U.S.
Theme: Sustainability
Economics
Modeling
Production of Galactitol from Galactose by
Oleaginous Yeast Rhodosporidium toruloides
IFO0880
Theme: Conversion
Genomics
Metabolomics
Reward-Based Participant Management
for Crowd-Sourcing Rainfall Monitoring:
An Agent-Based Model Simulation
Theme: Sustainability
Modeling
Software
Assessing Precipitation, Evapotranspiration,
and NDVI as Controls of U.S. Great Plains
Plant Production
Theme: Sustainability
Field Data
Modeling
PhenoCam Dataset v2.0 — Vegetation
Phenology from Digital Camera Imagery,
2000-2018
Theme: Sustainability
Field Data
PhenoCam Dataset v2.0 — Digital Camera
Imagery from the PhenoCam Network,
2000-2018
Theme: Sustainability
Field Data
Impact of Fractionation Process on the Technical
and Economic Viability of Corn Dry Grind Ethanol
Process
Theme: Conversion
Feedstock Bioprocessing
Modeling
Microbial Carbon Use Efficiency Predicted
from Genome-Scale Metabolic Models
Theme: Sustainability
Metabolomics
Modeling
Phylogenetic Relationship
Age-Related Changes in Miscanthus x giganteus Phenology and the Effect of Nitrogen Fertilization
Theme: Sustainability
Biomass Analytics
Field Data
Phenomics
Bayesian Confidence Intervals for Multiplexed
Proteomics Integrate Ion-Statistics with
Peptide Quantification Concordance
Theme: Conversion
Proteomics
Software
Development of a CRISPR/Cas9-Based Tool
for Gene Deletion in Issatchenkia orientalis
Theme: Conversion
Genome Engineering
Genomics
Transcriptomics
Sugar Production from Bioenergy Sorghum
by Using Pilot-Scale Continuous Hydrothermal
Pretreatment Combined with Disk Refining
Themes: Conversion, Sustainability
Genomics
Hydrolysate
Adopting Bioenergy Crops: Does Farmers’
Attitude toward Loss Matter?
Theme: Sustainability
Economics
Modeling
Software
Development of a CRISPR/Cas9 System
for High-Efficiency Multiplexed Gene Deletion
in Rhodosporidium toruloides
Theme: Conversion
Genome Engineering
Genomics
Transcriptomics
Excessive Rainfall Leads to Maize Yield
Loss of a Comparable Magnitude to
Extreme Drought in the United States
Theme: Sustainability
Economics
Field Data
Highly Efficient Single-Pot Scarless
Golden Gate Assembly
Theme: Conversion
Genome Engineering
Genomics
Generation of a Selectable Marker Free, Highly
Expressed Single Copy Locus as Landing Pad
for Transgene Stacking in Sugarcane
Theme: Feedstock Production
Biomass Analytics
Genomics
Miscanthus sinensis Multi-Location Trial:
Phenotypic Analysis, Genome-Wide
Association, and Genomic Prediction
Theme: Feedstock Production
Biomass Analytics
Genomics
Winter Hardiness of Miscanthus (III):
Genome‐Wide Association and Genomic
Prediction for Overwintering Ability in
Miscanthus sinensis
Theme: Feedstock Production
Biomass Analytics
Genomics
Proteotoxicity from Aberrant Ribosome
Biogenesis Compromises Cell Fitness
Theme: Conversion
Proteomics
RNA Sequencing
RefSoil Database
Theme: Sustainability
Genomics
Miscanthus x giganteus Yield in a REpeated
PLAnting Year (REPLAY) Experiment across
Three Sites in Iowa, USA
Theme: Sustainability
Biomass Analytics
Field Data
pH Selectively Regulates Citric Acid and
Lipid Production in Yarrowia lipolytica W29
During Nitrogen-Limited Growth on Glucose
Theme: Conversion
RNA Sequencing
Transcriptomics
Peak Annotation and Verification Engine
for Untargeted LC-MS Metabolomics
Theme: Conversion
Metabolomics
Software
Ethanol Production from Corn Fiber Separated
after Liquefaction in the Dry Grind Process
Theme: Conversion
Feedstock Bioprocessing
CropWatR
Theme: Sustainability
Economics
Modeling
A Designed Heme-[4Fe-4S] Metalloenzyme
Catalyzes Sulfite Reduction Like the Native
Enzyme
Theme: Conversion
Catalysis
Increasing Ethanol Yield through Fiber
Conversion in Corn Dry Grind Process
Theme: Conversion
Feedstock Bioprocessing
Rapid Screening of Lanthipeptide Analogs
via In-Colony Removal of Leader Peptides
in Escherichia coli
Theme: Conversion
Genome Engineering
Genomics
Cooperative Asymmetric Reactions Combining
Photocatalysis and Enzymatic Catalysis
Theme: Conversion
Catalysis