Convolutional Neural Network-based Sequence-to-Expression Prediction Tool (CoNSEPT)
CABBI Theme: Conversion
Dibaeinia, P., Sinha, S. March 14, 2021. CoNSEPT, GitHub Repository, https://github.com/PayamDiba/CoNSEPT.
CoNSEPT is a tool to predict gene expression in various cis and trans contexts. Inputs to CoNSEPT are enhancer sequence, transcription factor levels in one or many trans conditions, TF motifs (PWMs), and any prior knowledge of TF-TF interactions.
‘Limited Contact’ Scheme GEMSTAT
- Model Parameters
- Model Comparisons
Dibaeinia, P., Sinha, S. Sept. 11, 2021. “Deciphering Enhancer Sequence Using Thermodynamics-Based Models and Convolutional Neural Networks.” Nucleic Acids Research 49(18): 10309-10327. DOI: 10.1093/nar/gkab765.